==27245== Memcheck, a memory error detector ==27245== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27245== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27245== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27245== Parent PID: 24180 ==27245== ==27245== ==27245== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27245== Open file descriptor 12: ==27245== at 0xFD2C07D: pipe (pipe.c:29) ==27245== by 0x1971807D: ??? ==27245== by 0x14D204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27245== by 0x115EB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27245== by 0x11584D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27245== by 0x1027BD38: PetscInitialize (pinit.c:924) ==27245== by 0xF5041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27245== by 0xF504227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27245== by 0x22242E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27245== by 0x21BAF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27245== by 0x21F62A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27245== by 0x21F4CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27245== by 0x21FB61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27245== by 0x219ED5: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27245== ==27245== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27245== at 0xFD30A1C: __open_nocancel (open64_nocancel.c:39) ==27245== by 0xFCB4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27245== by 0xF53F822: ??? ==27245== by 0xF53F96F: ??? ==27245== by 0x14DC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27245== by 0x14DC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27245== by 0x14D7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27245== by 0x14D202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27245== by 0x115EB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27245== by 0x11584D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27245== by 0x1027BD38: PetscInitialize (pinit.c:924) ==27245== by 0xF5041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27245== by 0xF504227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27245== by 0x22242E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27245== by 0x21BAF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27245== by 0x21F62A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27245== by 0x21F4CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27245== by 0x21FB61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27245== by 0x219ED5: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27245== ==27245== Open file descriptor 158: ==27245== ==27245== ==27245== Open file descriptor 155: ==27245== ==27245== ==27245== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27245== ==27245== ==27245== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27245== ==27245== ==27245== ==27245== HEAP SUMMARY: ==27245== in use at exit: 618,348 bytes in 8,236 blocks ==27245== total heap usage: 8,121,501 allocs, 8,113,265 frees, 2,696,145,906 bytes allocated ==27245== ==27245== LEAK SUMMARY: ==27245== definitely lost: 0 bytes in 0 blocks ==27245== indirectly lost: 0 bytes in 0 blocks ==27245== possibly lost: 0 bytes in 0 blocks ==27245== still reachable: 56 bytes in 3 blocks ==27245== suppressed: 618,292 bytes in 8,233 blocks ==27245== Reachable blocks (those to which a pointer was found) are not shown. ==27245== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27245== ==27245== For lists of detected and suppressed errors, rerun with: -s ==27245== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)