==40495== Memcheck, a memory error detector ==40495== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40495== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40495== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40495== Parent PID: 24180 ==40495== ==40495== ==40495== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40495== Open file descriptor 12: ==40495== at 0xDC0007D: pipe (pipe.c:29) ==40495== by 0x1971707D: ??? ==40495== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40495== by 0x114C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40495== by 0x11459D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40495== by 0x10150D38: PetscInitialize (pinit.c:924) ==40495== by 0xD5011D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40495== by 0xD501227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40495== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40495== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40495== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40495== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40495== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40495== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40495== ==40495== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40495== at 0xDC04A1C: __open_nocancel (open64_nocancel.c:39) ==40495== by 0xDB88BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40495== by 0xD53C822: ??? ==40495== by 0xD53C96F: ??? ==40495== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40495== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40495== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40495== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40495== by 0x114C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40495== by 0x11459D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40495== by 0x10150D38: PetscInitialize (pinit.c:924) ==40495== by 0xD5011D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40495== by 0xD501227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40495== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40495== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40495== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40495== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40495== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40495== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40495== ==40495== Open file descriptor 158: ==40495== ==40495== ==40495== Open file descriptor 155: ==40495== ==40495== ==40495== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40495== ==40495== ==40495== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40495== ==40495== ==40495== ==40495== HEAP SUMMARY: ==40495== in use at exit: 618,348 bytes in 8,236 blocks ==40495== total heap usage: 40,687,052 allocs, 40,678,816 frees, 3,830,656,454 bytes allocated ==40495== ==40495== LEAK SUMMARY: ==40495== definitely lost: 0 bytes in 0 blocks ==40495== indirectly lost: 0 bytes in 0 blocks ==40495== possibly lost: 0 bytes in 0 blocks ==40495== still reachable: 56 bytes in 3 blocks ==40495== suppressed: 618,292 bytes in 8,233 blocks ==40495== Reachable blocks (those to which a pointer was found) are not shown. ==40495== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40495== ==40495== For lists of detected and suppressed errors, rerun with: -s ==40495== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)