==40559== Memcheck, a memory error detector ==40559== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40559== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40559== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40559== Parent PID: 24180 ==40559== ==40559== ==40559== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40559== Open file descriptor 12: ==40559== at 0x10E0207D: pipe (pipe.c:29) ==40559== by 0x1971707D: ??? ==40559== by 0x14C7D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40559== by 0x10623418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40559== by 0x105BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40559== by 0xF290D38: PetscInitialize (pinit.c:924) ==40559== by 0xF1671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40559== by 0xF167227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40559== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40559== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40559== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40559== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40559== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40559== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40559== ==40559== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40559== at 0x10E06A1C: __open_nocancel (open64_nocancel.c:39) ==40559== by 0x10D8ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40559== by 0x10520822: ??? ==40559== by 0x1052096F: ??? ==40559== by 0x14D246DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40559== by 0x14D24938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40559== by 0x14CDA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40559== by 0x14C7D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40559== by 0x10623418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40559== by 0x105BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40559== by 0xF290D38: PetscInitialize (pinit.c:924) ==40559== by 0xF1671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40559== by 0xF167227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40559== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40559== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40559== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40559== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40559== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40559== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40559== ==40559== Open file descriptor 158: ==40559== ==40559== ==40559== Open file descriptor 155: ==40559== ==40559== ==40559== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==40559== ==40559== ==40559== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40559== ==40559== ==40559== ==40559== HEAP SUMMARY: ==40559== in use at exit: 618,348 bytes in 8,236 blocks ==40559== total heap usage: 1,398,814 allocs, 1,390,578 frees, 1,398,768,709 bytes allocated ==40559== ==40559== LEAK SUMMARY: ==40559== definitely lost: 0 bytes in 0 blocks ==40559== indirectly lost: 0 bytes in 0 blocks ==40559== possibly lost: 0 bytes in 0 blocks ==40559== still reachable: 56 bytes in 3 blocks ==40559== suppressed: 618,292 bytes in 8,233 blocks ==40559== Reachable blocks (those to which a pointer was found) are not shown. ==40559== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40559== ==40559== For lists of detected and suppressed errors, rerun with: -s ==40559== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)