==26149== Memcheck, a memory error detector ==26149== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26149== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26149== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26149== Parent PID: 24180 ==26149== ==26149== ==26149== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26149== Open file descriptor 12: ==26149== at 0xDBB207D: pipe (pipe.c:29) ==26149== by 0x1971807D: ??? ==26149== by 0x14CD84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26149== by 0x111BD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26149== by 0x11156D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26149== by 0xFE4DD38: PetscInitialize (pinit.c:924) ==26149== by 0xD7B81D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26149== by 0xD7B8227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26149== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26149== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26149== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26149== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26149== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26149== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26149== ==26149== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26149== at 0xDBB6A1C: __open_nocancel (open64_nocancel.c:39) ==26149== by 0xDB3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26149== by 0xD7F3822: ??? ==26149== by 0xD7F396F: ??? ==26149== by 0x14D7D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26149== by 0x14D7D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26149== by 0x14D33922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26149== by 0x14CD82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26149== by 0x111BD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26149== by 0x11156D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26149== by 0xFE4DD38: PetscInitialize (pinit.c:924) ==26149== by 0xD7B81D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26149== by 0xD7B8227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26149== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26149== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26149== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26149== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26149== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26149== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26149== ==26149== Open file descriptor 158: ==26149== ==26149== ==26149== Open file descriptor 155: ==26149== ==26149== ==26149== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26149== ==26149== ==26149== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26149== ==26149== ==26149== ==26149== HEAP SUMMARY: ==26149== in use at exit: 618,387 bytes in 8,239 blocks ==26149== total heap usage: 58,394 allocs, 50,155 frees, 1,339,656,766 bytes allocated ==26149== ==26149== LEAK SUMMARY: ==26149== definitely lost: 0 bytes in 0 blocks ==26149== indirectly lost: 0 bytes in 0 blocks ==26149== possibly lost: 0 bytes in 0 blocks ==26149== still reachable: 24 bytes in 2 blocks ==26149== suppressed: 618,363 bytes in 8,237 blocks ==26149== Reachable blocks (those to which a pointer was found) are not shown. ==26149== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26149== ==26149== For lists of detected and suppressed errors, rerun with: -s ==26149== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)