==40804== Memcheck, a memory error detector ==40804== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40804== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40804== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40804== Parent PID: 24180 ==40804== ==40804== ==40804== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40804== Open file descriptor 12: ==40804== at 0x108B607D: pipe (pipe.c:29) ==40804== by 0x1B3D907D: ??? ==40804== by 0x1557C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40804== by 0x10503418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40804== by 0x1049CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40804== by 0xF193D38: PetscInitialize (pinit.c:924) ==40804== by 0xF06A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40804== by 0xF06A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40804== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40804== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40804== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40804== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40804== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40804== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40804== ==40804== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40804== at 0x108BAA1C: __open_nocancel (open64_nocancel.c:39) ==40804== by 0x1083EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40804== by 0x6122822: ??? ==40804== by 0x612296F: ??? ==40804== by 0x156216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40804== by 0x15621938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40804== by 0x155D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40804== by 0x1557C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40804== by 0x10503418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40804== by 0x1049CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40804== by 0xF193D38: PetscInitialize (pinit.c:924) ==40804== by 0xF06A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40804== by 0xF06A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40804== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40804== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40804== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40804== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40804== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40804== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40804== ==40804== Open file descriptor 158: ==40804== ==40804== ==40804== Open file descriptor 155: ==40804== ==40804== ==40804== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==40804== ==40804== ==40804== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40804== ==40804== ==40804== ==40804== HEAP SUMMARY: ==40804== in use at exit: 618,403 bytes in 8,239 blocks ==40804== total heap usage: 185,558 allocs, 177,319 frees, 1,420,264,634 bytes allocated ==40804== ==40804== LEAK SUMMARY: ==40804== definitely lost: 0 bytes in 0 blocks ==40804== indirectly lost: 0 bytes in 0 blocks ==40804== possibly lost: 0 bytes in 0 blocks ==40804== still reachable: 24 bytes in 2 blocks ==40804== suppressed: 618,379 bytes in 8,237 blocks ==40804== Reachable blocks (those to which a pointer was found) are not shown. ==40804== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40804== ==40804== For lists of detected and suppressed errors, rerun with: -s ==40804== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)