==26024== Memcheck, a memory error detector ==26024== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26024== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26024== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26024== Parent PID: 24093 ==26024== ==26024== ==26024== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26024== Open file descriptor 12: ==26024== at 0xEFF607D: pipe (pipe.c:29) ==26024== by 0x1971707D: ??? ==26024== by 0x13CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26024== by 0xEC01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26024== by 0xEB9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26024== by 0xD86ED38: PetscInitialize (pinit.c:924) ==26024== by 0xD7451D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26024== by 0xD745227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26024== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26024== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26024== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26024== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26024== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26024== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26024== ==26024== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26024== at 0xEFFAA1C: __open_nocancel (open64_nocancel.c:39) ==26024== by 0xEF7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26024== by 0xEAFE822: ??? ==26024== by 0xEAFE96F: ??? ==26024== by 0x13D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26024== by 0x13D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26024== by 0x13D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26024== by 0x13CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26024== by 0xEC01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26024== by 0xEB9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26024== by 0xD86ED38: PetscInitialize (pinit.c:924) ==26024== by 0xD7451D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26024== by 0xD745227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26024== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26024== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26024== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26024== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26024== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26024== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26024== ==26024== Open file descriptor 158: ==26024== ==26024== ==26024== Open file descriptor 155: ==26024== ==26024== ==26024== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26024== ==26024== ==26024== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26024== ==26024== ==26024== ==26024== HEAP SUMMARY: ==26024== in use at exit: 618,387 bytes in 8,239 blocks ==26024== total heap usage: 166,083 allocs, 157,844 frees, 1,349,980,479 bytes allocated ==26024== ==26024== LEAK SUMMARY: ==26024== definitely lost: 0 bytes in 0 blocks ==26024== indirectly lost: 0 bytes in 0 blocks ==26024== possibly lost: 0 bytes in 0 blocks ==26024== still reachable: 24 bytes in 2 blocks ==26024== suppressed: 618,363 bytes in 8,237 blocks ==26024== Reachable blocks (those to which a pointer was found) are not shown. ==26024== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26024== ==26024== For lists of detected and suppressed errors, rerun with: -s ==26024== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)