==40860== Memcheck, a memory error detector ==40860== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40860== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40860== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40860== Parent PID: 24093 ==40860== ==40860== ==40860== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40860== Open file descriptor 12: ==40860== at 0x1261D07D: pipe (pipe.c:29) ==40860== by 0x1B3D907D: ??? ==40860== by 0x1653E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40860== by 0x11F25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40860== by 0x11EBED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40860== by 0x10BB5D38: PetscInitialize (pinit.c:924) ==40860== by 0x10A8C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40860== by 0x10A8C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40860== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40860== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40860== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40860== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40860== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40860== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40860== ==40860== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40860== at 0x12621A1C: __open_nocancel (open64_nocancel.c:39) ==40860== by 0x125A5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40860== by 0x6122822: ??? ==40860== by 0x612296F: ??? ==40860== by 0x165E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40860== by 0x165E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40860== by 0x1659B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40860== by 0x1653E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40860== by 0x11F25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40860== by 0x11EBED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40860== by 0x10BB5D38: PetscInitialize (pinit.c:924) ==40860== by 0x10A8C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40860== by 0x10A8C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40860== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40860== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40860== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40860== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40860== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40860== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40860== ==40860== Open file descriptor 158: ==40860== ==40860== ==40860== Open file descriptor 155: ==40860== ==40860== ==40860== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40860== ==40860== ==40860== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40860== ==40860== ==40860== ==40860== HEAP SUMMARY: ==40860== in use at exit: 618,364 bytes in 8,236 blocks ==40860== total heap usage: 3,713,927 allocs, 3,705,691 frees, 1,620,672,479 bytes allocated ==40860== ==40860== LEAK SUMMARY: ==40860== definitely lost: 0 bytes in 0 blocks ==40860== indirectly lost: 0 bytes in 0 blocks ==40860== possibly lost: 0 bytes in 0 blocks ==40860== still reachable: 56 bytes in 3 blocks ==40860== suppressed: 618,308 bytes in 8,233 blocks ==40860== Reachable blocks (those to which a pointer was found) are not shown. ==40860== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40860== ==40860== For lists of detected and suppressed errors, rerun with: -s ==40860== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)