==40323== Memcheck, a memory error detector ==40323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40323== Parent PID: 24093 ==40323== ==40323== ==40323== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40323== Open file descriptor 12: ==40323== at 0x10D1B07D: pipe (pipe.c:29) ==40323== by 0x1971707D: ??? ==40323== by 0x14C7D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40323== by 0x10623418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40323== by 0x105BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40323== by 0xF290D38: PetscInitialize (pinit.c:924) ==40323== by 0xF1671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40323== by 0xF167227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40323== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40323== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40323== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40323== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40323== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40323== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) ==40323== ==40323== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40323== at 0x10D1FA1C: __open_nocancel (open64_nocancel.c:39) ==40323== by 0x10CA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40323== by 0x10520822: ??? ==40323== by 0x1052096F: ??? ==40323== by 0x14D246DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40323== by 0x14D24938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40323== by 0x14CDA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40323== by 0x14C7D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40323== by 0x10623418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40323== by 0x105BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40323== by 0xF290D38: PetscInitialize (pinit.c:924) ==40323== by 0xF1671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40323== by 0xF167227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40323== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40323== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40323== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40323== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40323== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40323== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) ==40323== ==40323== Open file descriptor 158: ==40323== ==40323== ==40323== Open file descriptor 155: ==40323== ==40323== ==40323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt ==40323== ==40323== ==40323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40323== ==40323== ==40323== ==40323== HEAP SUMMARY: ==40323== in use at exit: 618,364 bytes in 8,237 blocks ==40323== total heap usage: 2,563,972 allocs, 2,555,735 frees, 1,464,030,547 bytes allocated ==40323== ==40323== LEAK SUMMARY: ==40323== definitely lost: 0 bytes in 0 blocks ==40323== indirectly lost: 0 bytes in 0 blocks ==40323== possibly lost: 0 bytes in 0 blocks ==40323== still reachable: 72 bytes in 4 blocks ==40323== suppressed: 618,292 bytes in 8,233 blocks ==40323== Reachable blocks (those to which a pointer was found) are not shown. ==40323== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40323== ==40323== For lists of detected and suppressed errors, rerun with: -s ==40323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)