==41224== Memcheck, a memory error detector ==41224== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41224== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41224== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41224== Parent PID: 24093 ==41224== ==41224== ==41224== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41224== Open file descriptor 12: ==41224== at 0x125DB07D: pipe (pipe.c:29) ==41224== by 0x1B3D907D: ??? ==41224== by 0x1653E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41224== by 0x11EE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41224== by 0x11E7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41224== by 0x10B50D38: PetscInitialize (pinit.c:924) ==41224== by 0x10A271D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41224== by 0x10A27227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41224== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41224== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41224== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41224== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41224== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41224== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==41224== ==41224== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41224== at 0x125DFA1C: __open_nocancel (open64_nocancel.c:39) ==41224== by 0x12563BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41224== by 0x11DE0822: ??? ==41224== by 0x11DE096F: ??? ==41224== by 0x165E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41224== by 0x165E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41224== by 0x1659B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41224== by 0x1653E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41224== by 0x11EE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41224== by 0x11E7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41224== by 0x10B50D38: PetscInitialize (pinit.c:924) ==41224== by 0x10A271D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41224== by 0x10A27227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41224== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41224== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41224== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41224== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41224== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41224== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==41224== ==41224== Open file descriptor 158: ==41224== ==41224== ==41224== Open file descriptor 155: ==41224== ==41224== ==41224== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==41224== ==41224== ==41224== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41224== ==41224== ==41224== ==41224== HEAP SUMMARY: ==41224== in use at exit: 618,435 bytes in 8,240 blocks ==41224== total heap usage: 1,755,673 allocs, 1,747,433 frees, 1,515,900,695 bytes allocated ==41224== ==41224== LEAK SUMMARY: ==41224== definitely lost: 0 bytes in 0 blocks ==41224== indirectly lost: 0 bytes in 0 blocks ==41224== possibly lost: 0 bytes in 0 blocks ==41224== still reachable: 56 bytes in 3 blocks ==41224== suppressed: 618,379 bytes in 8,237 blocks ==41224== Reachable blocks (those to which a pointer was found) are not shown. ==41224== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41224== ==41224== For lists of detected and suppressed errors, rerun with: -s ==41224== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)