==40420== Memcheck, a memory error detector ==40420== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40420== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40420== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40420== Parent PID: 24093 ==40420== ==40420== ==40420== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40420== Open file descriptor 12: ==40420== at 0xF94B07D: pipe (pipe.c:29) ==40420== by 0x1971707D: ??? ==40420== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40420== by 0x115A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40420== by 0x11542D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40420== by 0x10237D38: PetscInitialize (pinit.c:924) ==40420== by 0xF1671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40420== by 0xF167227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40420== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40420== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40420== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40420== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40420== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40420== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40420== ==40420== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40420== at 0xF94FA1C: __open_nocancel (open64_nocancel.c:39) ==40420== by 0xF8D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40420== by 0xF1A2822: ??? ==40420== by 0xF1A296F: ??? ==40420== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40420== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40420== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40420== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40420== by 0x115A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40420== by 0x11542D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40420== by 0x10237D38: PetscInitialize (pinit.c:924) ==40420== by 0xF1671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40420== by 0xF167227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40420== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40420== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40420== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40420== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40420== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40420== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40420== ==40420== Open file descriptor 158: ==40420== ==40420== ==40420== Open file descriptor 155: ==40420== ==40420== ==40420== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40420== ==40420== ==40420== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40420== ==40420== ==40420== ==40420== HEAP SUMMARY: ==40420== in use at exit: 618,419 bytes in 8,240 blocks ==40420== total heap usage: 725,429 allocs, 717,189 frees, 1,726,754,200 bytes allocated ==40420== ==40420== LEAK SUMMARY: ==40420== definitely lost: 0 bytes in 0 blocks ==40420== indirectly lost: 0 bytes in 0 blocks ==40420== possibly lost: 0 bytes in 0 blocks ==40420== still reachable: 56 bytes in 3 blocks ==40420== suppressed: 618,363 bytes in 8,237 blocks ==40420== Reachable blocks (those to which a pointer was found) are not shown. ==40420== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40420== ==40420== For lists of detected and suppressed errors, rerun with: -s ==40420== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)