==40539== Memcheck, a memory error detector ==40539== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40539== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40539== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40539== Parent PID: 24093 ==40539== ==40539== ==40539== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40539== Open file descriptor 12: ==40539== at 0x109B907D: pipe (pipe.c:29) ==40539== by 0x1B3D907D: ??? ==40539== by 0x1552B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40539== by 0x102C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40539== by 0x1025AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40539== by 0xEF51D38: PetscInitialize (pinit.c:924) ==40539== by 0xEE281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40539== by 0xEE28227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40539== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40539== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40539== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40539== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40539== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40539== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40539== ==40539== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40539== at 0x109BDA1C: __open_nocancel (open64_nocancel.c:39) ==40539== by 0x10941BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40539== by 0x6122822: ??? ==40539== by 0x612296F: ??? ==40539== by 0x155D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40539== by 0x155D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40539== by 0x15586922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40539== by 0x1552B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40539== by 0x102C1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40539== by 0x1025AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40539== by 0xEF51D38: PetscInitialize (pinit.c:924) ==40539== by 0xEE281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40539== by 0xEE28227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40539== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40539== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40539== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40539== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40539== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40539== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40539== ==40539== Open file descriptor 158: ==40539== ==40539== ==40539== Open file descriptor 155: ==40539== ==40539== ==40539== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40539== ==40539== ==40539== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40539== ==40539== ==40539== ==40539== HEAP SUMMARY: ==40539== in use at exit: 618,499 bytes in 8,241 blocks ==40539== total heap usage: 754,716 allocs, 746,475 frees, 1,373,121,257 bytes allocated ==40539== ==40539== LEAK SUMMARY: ==40539== definitely lost: 0 bytes in 0 blocks ==40539== indirectly lost: 0 bytes in 0 blocks ==40539== possibly lost: 0 bytes in 0 blocks ==40539== still reachable: 120 bytes in 4 blocks ==40539== suppressed: 618,379 bytes in 8,237 blocks ==40539== Reachable blocks (those to which a pointer was found) are not shown. ==40539== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40539== ==40539== For lists of detected and suppressed errors, rerun with: -s ==40539== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)