==38189== Memcheck, a memory error detector ==38189== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==38189== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==38189== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info ==38189== Parent PID: 24093 ==38189== ==38189== ==38189== FILE DESCRIPTORS: 9 open (3 std) at exit. ==38189== Open file descriptor 12: ==38189== at 0x4CB407D: pipe (pipe.c:29) ==38189== by 0xAEA507D: ??? ==38189== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==38189== by 0x622D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==38189== by 0x61C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==38189== by 0x4EBDD38: PetscInitialize (pinit.c:924) ==38189== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==38189== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==38189== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==38189== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==38189== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==38189== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==38189== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==38189== by 0x10D735: main (TestStepSizeException.cpp:19) ==38189== ==38189== Open file descriptor 8: /dev/shm/open_mpi.0000 ==38189== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) ==38189== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==38189== by 0x4935822: ??? ==38189== by 0x493596F: ??? ==38189== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==38189== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==38189== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==38189== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==38189== by 0x622D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==38189== by 0x61C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==38189== by 0x4EBDD38: PetscInitialize (pinit.c:924) ==38189== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==38189== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==38189== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==38189== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==38189== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==38189== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==38189== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==38189== by 0x10D735: main (TestStepSizeException.cpp:19) ==38189== ==38189== Open file descriptor 158: ==38189== ==38189== ==38189== Open file descriptor 155: ==38189== ==38189== ==38189== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt ==38189== ==38189== ==38189== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==38189== ==38189== ==38189== ==38189== HEAP SUMMARY: ==38189== in use at exit: 617,907 bytes in 8,239 blocks ==38189== total heap usage: 44,915 allocs, 36,676 frees, 1,338,500,410 bytes allocated ==38189== ==38189== LEAK SUMMARY: ==38189== definitely lost: 0 bytes in 0 blocks ==38189== indirectly lost: 0 bytes in 0 blocks ==38189== possibly lost: 0 bytes in 0 blocks ==38189== still reachable: 24 bytes in 2 blocks ==38189== suppressed: 617,883 bytes in 8,237 blocks ==38189== Reachable blocks (those to which a pointer was found) are not shown. ==38189== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==38189== ==38189== For lists of detected and suppressed errors, rerun with: -s ==38189== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)