==40770== Memcheck, a memory error detector ==40770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40770== Parent PID: 24093 ==40770== ==40770== ==40770== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40770== Open file descriptor 12: ==40770== at 0x125DB07D: pipe (pipe.c:29) ==40770== by 0x1B3D907D: ??? ==40770== by 0x1653E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40770== by 0x11EE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40770== by 0x11E7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40770== by 0x10B50D38: PetscInitialize (pinit.c:924) ==40770== by 0x10A271D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40770== by 0x10A27227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40770== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40770== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40770== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40770== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40770== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40770== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40770== ==40770== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40770== at 0x125DFA1C: __open_nocancel (open64_nocancel.c:39) ==40770== by 0x12563BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40770== by 0x11DE0822: ??? ==40770== by 0x11DE096F: ??? ==40770== by 0x165E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40770== by 0x165E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40770== by 0x1659B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40770== by 0x1653E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40770== by 0x11EE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40770== by 0x11E7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40770== by 0x10B50D38: PetscInitialize (pinit.c:924) ==40770== by 0x10A271D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40770== by 0x10A27227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40770== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40770== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40770== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40770== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40770== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40770== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40770== ==40770== Open file descriptor 158: ==40770== ==40770== ==40770== Open file descriptor 155: ==40770== ==40770== ==40770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40770== ==40770== ==40770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40770== ==40770== ==40770== ==40770== HEAP SUMMARY: ==40770== in use at exit: 618,515 bytes in 8,241 blocks ==40770== total heap usage: 53,878 allocs, 45,637 frees, 1,339,302,629 bytes allocated ==40770== ==40770== LEAK SUMMARY: ==40770== definitely lost: 0 bytes in 0 blocks ==40770== indirectly lost: 0 bytes in 0 blocks ==40770== possibly lost: 0 bytes in 0 blocks ==40770== still reachable: 136 bytes in 4 blocks ==40770== suppressed: 618,379 bytes in 8,237 blocks ==40770== Reachable blocks (those to which a pointer was found) are not shown. ==40770== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40770== ==40770== For lists of detected and suppressed errors, rerun with: -s ==40770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)