==42019== Memcheck, a memory error detector ==42019== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==42019== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==42019== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info ==42019== Parent PID: 24084 ==42019== ==42019== ==42019== FILE DESCRIPTORS: 9 open (3 std) at exit. ==42019== Open file descriptor 12: ==42019== at 0x856E07D: pipe (pipe.c:29) ==42019== by 0x1432F07D: ??? ==42019== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42019== by 0x9C69418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42019== by 0x9C02D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42019== by 0x88F9D38: PetscInitialize (pinit.c:924) ==42019== by 0x819B079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42019== by 0x819B0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42019== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==42019== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42019== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42019== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42019== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42019== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) ==42019== ==42019== Open file descriptor 8: /dev/shm/open_mpi.0000 ==42019== at 0x8572A1C: __open_nocancel (open64_nocancel.c:39) ==42019== by 0x84F6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==42019== by 0x81D5822: ??? ==42019== by 0x81D596F: ??? ==42019== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42019== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42019== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42019== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42019== by 0x9C69418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42019== by 0x9C02D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42019== by 0x88F9D38: PetscInitialize (pinit.c:924) ==42019== by 0x819B079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42019== by 0x819B0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42019== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==42019== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42019== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42019== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42019== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42019== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) ==42019== ==42019== Open file descriptor 158: ==42019== ==42019== ==42019== Open file descriptor 155: ==42019== ==42019== ==42019== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt ==42019== ==42019== ==42019== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==42019== ==42019== ==42019== ==42019== HEAP SUMMARY: ==42019== in use at exit: 618,407 bytes in 8,239 blocks ==42019== total heap usage: 49,007 allocs, 40,768 frees, 1,338,877,431 bytes allocated ==42019== ==42019== LEAK SUMMARY: ==42019== definitely lost: 0 bytes in 0 blocks ==42019== indirectly lost: 0 bytes in 0 blocks ==42019== possibly lost: 0 bytes in 0 blocks ==42019== still reachable: 24 bytes in 2 blocks ==42019== suppressed: 618,383 bytes in 8,237 blocks ==42019== Reachable blocks (those to which a pointer was found) are not shown. ==42019== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==42019== ==42019== For lists of detected and suppressed errors, rerun with: -s ==42019== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)