==26680== Memcheck, a memory error detector ==26680== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26680== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26680== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==26680== Parent PID: 24086 ==26680== ==26680== ==26680== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26680== Open file descriptor 12: ==26680== at 0xF97307D: pipe (pipe.c:29) ==26680== by 0x196FB07D: ??? ==26680== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26680== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26680== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26680== by 0x1025FD38: PetscInitialize (pinit.c:924) ==26680== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26680== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26680== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26680== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26680== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26680== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26680== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26680== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26680== ==26680== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26680== at 0xF977A1C: __open_nocancel (open64_nocancel.c:39) ==26680== by 0xF8FBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26680== by 0xF186822: ??? ==26680== by 0xF18696F: ??? ==26680== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26680== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26680== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26680== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26680== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26680== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26680== by 0x1025FD38: PetscInitialize (pinit.c:924) ==26680== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26680== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26680== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26680== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26680== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26680== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26680== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26680== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26680== ==26680== Open file descriptor 158: ==26680== ==26680== ==26680== Open file descriptor 155: ==26680== ==26680== ==26680== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==26680== ==26680== ==26680== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26680== ==26680== ==26680== ==26680== HEAP SUMMARY: ==26680== in use at exit: 618,348 bytes in 8,236 blocks ==26680== total heap usage: 12,337,461 allocs, 12,329,225 frees, 3,799,161,326 bytes allocated ==26680== ==26680== LEAK SUMMARY: ==26680== definitely lost: 0 bytes in 0 blocks ==26680== indirectly lost: 0 bytes in 0 blocks ==26680== possibly lost: 0 bytes in 0 blocks ==26680== still reachable: 56 bytes in 3 blocks ==26680== suppressed: 618,292 bytes in 8,233 blocks ==26680== Reachable blocks (those to which a pointer was found) are not shown. ==26680== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26680== ==26680== For lists of detected and suppressed errors, rerun with: -s ==26680== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)