==40728== Memcheck, a memory error detector ==40728== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40728== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40728== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40728== Parent PID: 24146 ==40728== ==40728== ==40728== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40728== Open file descriptor 12: ==40728== at 0x1284307D: pipe (pipe.c:29) ==40728== by 0x1B3BD07D: ??? ==40728== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40728== by 0x1214B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40728== by 0x120E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40728== by 0x10DDBD38: PetscInitialize (pinit.c:924) ==40728== by 0x10CB3079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40728== by 0x10CB30C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40728== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40728== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40728== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40728== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40728== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40728== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40728== ==40728== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40728== at 0x12847A1C: __open_nocancel (open64_nocancel.c:39) ==40728== by 0x127CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40728== by 0x6122822: ??? ==40728== by 0x612296F: ??? ==40728== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40728== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40728== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40728== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40728== by 0x1214B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40728== by 0x120E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40728== by 0x10DDBD38: PetscInitialize (pinit.c:924) ==40728== by 0x10CB3079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40728== by 0x10CB30C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40728== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40728== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40728== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40728== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40728== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40728== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40728== ==40728== Open file descriptor 158: ==40728== ==40728== ==40728== Open file descriptor 155: ==40728== ==40728== ==40728== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==40728== ==40728== ==40728== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40728== ==40728== ==40728== ==40728== HEAP SUMMARY: ==40728== in use at exit: 618,407 bytes in 8,239 blocks ==40728== total heap usage: 519,289 allocs, 511,050 frees, 1,547,441,390 bytes allocated ==40728== ==40728== LEAK SUMMARY: ==40728== definitely lost: 0 bytes in 0 blocks ==40728== indirectly lost: 0 bytes in 0 blocks ==40728== possibly lost: 0 bytes in 0 blocks ==40728== still reachable: 24 bytes in 2 blocks ==40728== suppressed: 618,383 bytes in 8,237 blocks ==40728== Reachable blocks (those to which a pointer was found) are not shown. ==40728== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40728== ==40728== For lists of detected and suppressed errors, rerun with: -s ==40728== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)