==40681== Memcheck, a memory error detector ==40681== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40681== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40681== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40681== Parent PID: 24146 ==40681== ==40681== ==40681== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40681== Open file descriptor 12: ==40681== at 0x1110807D: pipe (pipe.c:29) ==40681== by 0x1B3BE07D: ??? ==40681== by 0x165C14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40681== by 0x12E8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40681== by 0x12E28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40681== by 0x11B1FD38: PetscInitialize (pinit.c:924) ==40681== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40681== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40681== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40681== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40681== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40681== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40681== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40681== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40681== ==40681== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40681== at 0x1110CA1C: __open_nocancel (open64_nocancel.c:39) ==40681== by 0x11090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40681== by 0x10A46822: ??? ==40681== by 0x10A4696F: ??? ==40681== by 0x166666DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40681== by 0x16666938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40681== by 0x1661C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40681== by 0x165C12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40681== by 0x12E8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40681== by 0x12E28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40681== by 0x11B1FD38: PetscInitialize (pinit.c:924) ==40681== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40681== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40681== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40681== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40681== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40681== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40681== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40681== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40681== ==40681== Open file descriptor 158: ==40681== ==40681== ==40681== Open file descriptor 155: ==40681== ==40681== ==40681== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40681== ==40681== ==40681== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40681== ==40681== ==40681== ==40681== HEAP SUMMARY: ==40681== in use at exit: 618,439 bytes in 8,240 blocks ==40681== total heap usage: 56,489 allocs, 48,249 frees, 1,339,522,033 bytes allocated ==40681== ==40681== LEAK SUMMARY: ==40681== definitely lost: 0 bytes in 0 blocks ==40681== indirectly lost: 0 bytes in 0 blocks ==40681== possibly lost: 0 bytes in 0 blocks ==40681== still reachable: 56 bytes in 3 blocks ==40681== suppressed: 618,383 bytes in 8,237 blocks ==40681== Reachable blocks (those to which a pointer was found) are not shown. ==40681== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40681== ==40681== For lists of detected and suppressed errors, rerun with: -s ==40681== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)