==25556== Memcheck, a memory error detector ==25556== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25556== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25556== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info ==25556== Parent PID: 24197 ==25556== ==25556== ==25556== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25556== Open file descriptor 12: ==25556== at 0xED5407D: pipe (pipe.c:29) ==25556== by 0x196FB07D: ??? ==25556== by 0x13C4F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25556== by 0xE9A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25556== by 0xE93CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25556== by 0xD610D38: PetscInitialize (pinit.c:924) ==25556== by 0xD4E6079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25556== by 0xD4E60C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25556== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25556== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25556== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25556== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25556== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25556== by 0x113935: main (TestCellSrn.cpp:18) ==25556== ==25556== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25556== at 0xED58A1C: __open_nocancel (open64_nocancel.c:39) ==25556== by 0xECDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25556== by 0xE8A0822: ??? ==25556== by 0xE8A096F: ??? ==25556== by 0x13CF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25556== by 0x13CF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25556== by 0x13CAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25556== by 0x13C4F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25556== by 0xE9A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25556== by 0xE93CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25556== by 0xD610D38: PetscInitialize (pinit.c:924) ==25556== by 0xD4E6079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25556== by 0xD4E60C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25556== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25556== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25556== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25556== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25556== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25556== by 0x113935: main (TestCellSrn.cpp:18) ==25556== ==25556== Open file descriptor 158: ==25556== ==25556== ==25556== Open file descriptor 155: ==25556== ==25556== ==25556== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt ==25556== ==25556== ==25556== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25556== ==25556== ==25556== ==25556== HEAP SUMMARY: ==25556== in use at exit: 618,487 bytes in 8,241 blocks ==25556== total heap usage: 63,325 allocs, 55,084 frees, 1,339,729,378 bytes allocated ==25556== ==25556== LEAK SUMMARY: ==25556== definitely lost: 0 bytes in 0 blocks ==25556== indirectly lost: 0 bytes in 0 blocks ==25556== possibly lost: 0 bytes in 0 blocks ==25556== still reachable: 120 bytes in 4 blocks ==25556== suppressed: 618,367 bytes in 8,237 blocks ==25556== Reachable blocks (those to which a pointer was found) are not shown. ==25556== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25556== ==25556== For lists of detected and suppressed errors, rerun with: -s ==25556== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)