==39992== Memcheck, a memory error detector ==39992== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39992== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39992== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39992== Parent PID: 24174 ==39992== ==39992== ==39992== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39992== Open file descriptor 12: ==39992== at 0x10D4107D: pipe (pipe.c:29) ==39992== by 0x196FB07D: ??? ==39992== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39992== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39992== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39992== by 0xF274D38: PetscInitialize (pinit.c:924) ==39992== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39992== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39992== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39992== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39992== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39992== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39992== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39992== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39992== ==39992== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39992== at 0x10D45A1C: __open_nocancel (open64_nocancel.c:39) ==39992== by 0x10CC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39992== by 0x10504822: ??? ==39992== by 0x1050496F: ??? ==39992== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39992== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39992== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39992== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39992== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39992== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39992== by 0xF274D38: PetscInitialize (pinit.c:924) ==39992== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39992== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39992== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39992== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39992== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39992== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39992== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39992== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39992== ==39992== Open file descriptor 158: ==39992== ==39992== ==39992== Open file descriptor 155: ==39992== ==39992== ==39992== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39992== ==39992== ==39992== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39992== ==39992== ==39992== ==39992== HEAP SUMMARY: ==39992== in use at exit: 618,423 bytes in 8,240 blocks ==39992== total heap usage: 579,721 allocs, 571,481 frees, 1,652,037,423 bytes allocated ==39992== ==39992== LEAK SUMMARY: ==39992== definitely lost: 0 bytes in 0 blocks ==39992== indirectly lost: 0 bytes in 0 blocks ==39992== possibly lost: 0 bytes in 0 blocks ==39992== still reachable: 56 bytes in 3 blocks ==39992== suppressed: 618,367 bytes in 8,237 blocks ==39992== Reachable blocks (those to which a pointer was found) are not shown. ==39992== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39992== ==39992== For lists of detected and suppressed errors, rerun with: -s ==39992== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)