==33817== Memcheck, a memory error detector ==33817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==33817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==33817== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==33817== Parent PID: 24097 ==33817== ==33817== ==33817== FILE DESCRIPTORS: 9 open (3 std) at exit. ==33817== Open file descriptor 12: ==33817== at 0xF97307D: pipe (pipe.c:29) ==33817== by 0x196FB07D: ??? ==33817== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==33817== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==33817== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==33817== by 0x1025FD38: PetscInitialize (pinit.c:924) ==33817== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==33817== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==33817== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==33817== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==33817== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==33817== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==33817== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==33817== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==33817== ==33817== Open file descriptor 8: /dev/shm/open_mpi.0000 ==33817== at 0xF977A1C: __open_nocancel (open64_nocancel.c:39) ==33817== by 0xF8FBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==33817== by 0xF186822: ??? ==33817== by 0xF18696F: ??? ==33817== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==33817== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==33817== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==33817== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==33817== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==33817== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==33817== by 0x1025FD38: PetscInitialize (pinit.c:924) ==33817== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==33817== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==33817== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==33817== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==33817== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==33817== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==33817== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==33817== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==33817== ==33817== Open file descriptor 158: ==33817== ==33817== ==33817== Open file descriptor 155: ==33817== ==33817== ==33817== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==33817== ==33817== ==33817== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==33817== ==33817== ==33817== ==33817== HEAP SUMMARY: ==33817== in use at exit: 618,364 bytes in 8,237 blocks ==33817== total heap usage: 11,682,533 allocs, 11,674,296 frees, 2,208,528,641 bytes allocated ==33817== ==33817== LEAK SUMMARY: ==33817== definitely lost: 0 bytes in 0 blocks ==33817== indirectly lost: 0 bytes in 0 blocks ==33817== possibly lost: 0 bytes in 0 blocks ==33817== still reachable: 72 bytes in 4 blocks ==33817== suppressed: 618,292 bytes in 8,233 blocks ==33817== Reachable blocks (those to which a pointer was found) are not shown. ==33817== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==33817== ==33817== For lists of detected and suppressed errors, rerun with: -s ==33817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)