==40946== Memcheck, a memory error detector ==40946== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40946== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40946== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40946== Parent PID: 24291 ==40946== ==40946== ==40946== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40946== Open file descriptor 12: ==40946== at 0x1260107D: pipe (pipe.c:29) ==40946== by 0x1B3BC07D: ??? ==40946== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40946== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40946== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40946== by 0x10B99D38: PetscInitialize (pinit.c:924) ==40946== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40946== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40946== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40946== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40946== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40946== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40946== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40946== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40946== ==40946== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40946== at 0x12605A1C: __open_nocancel (open64_nocancel.c:39) ==40946== by 0x12589BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40946== by 0x6122822: ??? ==40946== by 0x612296F: ??? ==40946== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40946== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40946== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40946== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40946== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40946== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40946== by 0x10B99D38: PetscInitialize (pinit.c:924) ==40946== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40946== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40946== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40946== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40946== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40946== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40946== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40946== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40946== ==40946== Open file descriptor 158: ==40946== ==40946== ==40946== Open file descriptor 155: ==40946== ==40946== ==40946== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40946== ==40946== ==40946== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40946== ==40946== ==40946== ==40946== HEAP SUMMARY: ==40946== in use at exit: 618,364 bytes in 8,236 blocks ==40946== total heap usage: 3,713,923 allocs, 3,705,687 frees, 1,620,671,763 bytes allocated ==40946== ==40946== LEAK SUMMARY: ==40946== definitely lost: 0 bytes in 0 blocks ==40946== indirectly lost: 0 bytes in 0 blocks ==40946== possibly lost: 0 bytes in 0 blocks ==40946== still reachable: 56 bytes in 3 blocks ==40946== suppressed: 618,308 bytes in 8,233 blocks ==40946== Reachable blocks (those to which a pointer was found) are not shown. ==40946== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40946== ==40946== For lists of detected and suppressed errors, rerun with: -s ==40946== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)