==40562== Memcheck, a memory error detector ==40562== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40562== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40562== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40562== Parent PID: 24291 ==40562== ==40562== ==40562== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40562== Open file descriptor 12: ==40562== at 0xF92F07D: pipe (pipe.c:29) ==40562== by 0x196FB07D: ??? ==40562== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40562== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x1021BD38: PetscInitialize (pinit.c:924) ==40562== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40562== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40562== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40562== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40562== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40562== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40562== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40562== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40562== ==40562== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40562== at 0xF933A1C: __open_nocancel (open64_nocancel.c:39) ==40562== by 0xF8B7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40562== by 0xF186822: ??? ==40562== by 0xF18696F: ??? ==40562== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40562== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40562== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40562== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40562== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x1021BD38: PetscInitialize (pinit.c:924) ==40562== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40562== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40562== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40562== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40562== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40562== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40562== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40562== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40562== ==40562== Open file descriptor 158: ==40562== ==40562== ==40562== Open file descriptor 155: ==40562== ==40562== ==40562== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40562== ==40562== ==40562== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40562== ==40562== ==40562== ==40562== HEAP SUMMARY: ==40562== in use at exit: 618,419 bytes in 8,240 blocks ==40562== total heap usage: 721,830 allocs, 713,590 frees, 1,725,555,633 bytes allocated ==40562== ==40562== LEAK SUMMARY: ==40562== definitely lost: 0 bytes in 0 blocks ==40562== indirectly lost: 0 bytes in 0 blocks ==40562== possibly lost: 0 bytes in 0 blocks ==40562== still reachable: 56 bytes in 3 blocks ==40562== suppressed: 618,363 bytes in 8,237 blocks ==40562== Reachable blocks (those to which a pointer was found) are not shown. ==40562== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40562== ==40562== For lists of detected and suppressed errors, rerun with: -s ==40562== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)