==26178== Memcheck, a memory error detector ==26178== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26178== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26178== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26178== Parent PID: 24291 ==26178== ==26178== ==26178== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26178== Open file descriptor 12: ==26178== at 0xDB9607D: pipe (pipe.c:29) ==26178== by 0x196FC07D: ??? ==26178== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26178== by 0x111A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0x1113AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0xFE31D38: PetscInitialize (pinit.c:924) ==26178== by 0xD79D079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26178== by 0xD79D0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26178== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26178== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26178== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26178== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26178== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26178== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26178== ==26178== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26178== at 0xDB9AA1C: __open_nocancel (open64_nocancel.c:39) ==26178== by 0xDB1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26178== by 0xD7D7822: ??? ==26178== by 0xD7D796F: ??? ==26178== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26178== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26178== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26178== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26178== by 0x111A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0x1113AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26178== by 0xFE31D38: PetscInitialize (pinit.c:924) ==26178== by 0xD79D079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26178== by 0xD79D0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26178== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26178== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26178== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26178== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26178== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26178== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26178== ==26178== Open file descriptor 158: ==26178== ==26178== ==26178== Open file descriptor 155: ==26178== ==26178== ==26178== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26178== ==26178== ==26178== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26178== ==26178== ==26178== ==26178== HEAP SUMMARY: ==26178== in use at exit: 618,387 bytes in 8,239 blocks ==26178== total heap usage: 58,392 allocs, 50,153 frees, 1,339,656,444 bytes allocated ==26178== ==26178== LEAK SUMMARY: ==26178== definitely lost: 0 bytes in 0 blocks ==26178== indirectly lost: 0 bytes in 0 blocks ==26178== possibly lost: 0 bytes in 0 blocks ==26178== still reachable: 24 bytes in 2 blocks ==26178== suppressed: 618,363 bytes in 8,237 blocks ==26178== Reachable blocks (those to which a pointer was found) are not shown. ==26178== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26178== ==26178== For lists of detected and suppressed errors, rerun with: -s ==26178== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)