==27040== Memcheck, a memory error detector ==27040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27040== Parent PID: 24329 ==27040== ==27040== ==27040== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27040== Open file descriptor 12: ==27040== at 0xF97307D: pipe (pipe.c:29) ==27040== by 0x196FC07D: ??? ==27040== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27040== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27040== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27040== by 0x1025FD38: PetscInitialize (pinit.c:924) ==27040== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27040== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27040== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27040== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27040== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27040== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27040== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27040== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==27040== ==27040== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27040== at 0xF977A1C: __open_nocancel (open64_nocancel.c:39) ==27040== by 0xF8FBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27040== by 0xF180822: ??? ==27040== by 0xF18096F: ??? ==27040== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27040== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27040== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27040== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27040== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27040== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27040== by 0x1025FD38: PetscInitialize (pinit.c:924) ==27040== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27040== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27040== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27040== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27040== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27040== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27040== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27040== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==27040== ==27040== Open file descriptor 158: ==27040== ==27040== ==27040== Open file descriptor 155: ==27040== ==27040== ==27040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==27040== ==27040== ==27040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27040== ==27040== ==27040== ==27040== HEAP SUMMARY: ==27040== in use at exit: 618,396 bytes in 8,237 blocks ==27040== total heap usage: 18,260,841 allocs, 18,252,604 frees, 30,028,377,081 bytes allocated ==27040== ==27040== LEAK SUMMARY: ==27040== definitely lost: 0 bytes in 0 blocks ==27040== indirectly lost: 0 bytes in 0 blocks ==27040== possibly lost: 0 bytes in 0 blocks ==27040== still reachable: 88 bytes in 4 blocks ==27040== suppressed: 618,308 bytes in 8,233 blocks ==27040== Reachable blocks (those to which a pointer was found) are not shown. ==27040== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27040== ==27040== For lists of detected and suppressed errors, rerun with: -s ==27040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)