==29073== Memcheck, a memory error detector ==29073== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==29073== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==29073== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==29073== Parent PID: 24404 ==29073== ==29073== ==29073== FILE DESCRIPTORS: 9 open (3 std) at exit. ==29073== Open file descriptor 12: ==29073== at 0xFCCE07D: pipe (pipe.c:29) ==29073== by 0x196FC07D: ??? ==29073== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29073== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29073== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29073== by 0x1021BD38: PetscInitialize (pinit.c:924) ==29073== by 0xF4E9079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29073== by 0xF4E90C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29073== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29073== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29073== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29073== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29073== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29073== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29073== ==29073== Open file descriptor 8: /dev/shm/open_mpi.0000 ==29073== at 0xFCD2A1C: __open_nocancel (open64_nocancel.c:39) ==29073== by 0xFC56BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==29073== by 0xF51D822: ??? ==29073== by 0xF51D96F: ??? ==29073== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29073== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29073== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29073== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29073== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29073== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29073== by 0x1021BD38: PetscInitialize (pinit.c:924) ==29073== by 0xF4E9079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29073== by 0xF4E90C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29073== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29073== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29073== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29073== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29073== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29073== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29073== ==29073== Open file descriptor 158: ==29073== ==29073== ==29073== Open file descriptor 155: ==29073== ==29073== ==29073== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==29073== ==29073== ==29073== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==29073== ==29073== ==29073== ==29073== HEAP SUMMARY: ==29073== in use at exit: 618,364 bytes in 8,236 blocks ==29073== total heap usage: 2,403,732 allocs, 2,395,496 frees, 1,794,893,425 bytes allocated ==29073== ==29073== LEAK SUMMARY: ==29073== definitely lost: 0 bytes in 0 blocks ==29073== indirectly lost: 0 bytes in 0 blocks ==29073== possibly lost: 0 bytes in 0 blocks ==29073== still reachable: 56 bytes in 3 blocks ==29073== suppressed: 618,308 bytes in 8,233 blocks ==29073== Reachable blocks (those to which a pointer was found) are not shown. ==29073== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==29073== ==29073== For lists of detected and suppressed errors, rerun with: -s ==29073== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)