==41348== Memcheck, a memory error detector ==41348== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41348== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41348== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==41348== Parent PID: 24404 ==41348== ==41348== ==41348== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41348== Open file descriptor 12: ==41348== at 0x125BF07D: pipe (pipe.c:29) ==41348== by 0x1B3BD07D: ??? ==41348== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41348== by 0x11EC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41348== by 0x11E60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41348== by 0x10B34D38: PetscInitialize (pinit.c:924) ==41348== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41348== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41348== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41348== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41348== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41348== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41348== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41348== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41348== ==41348== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41348== at 0x125C3A1C: __open_nocancel (open64_nocancel.c:39) ==41348== by 0x12547BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41348== by 0x11DBE822: ??? ==41348== by 0x11DBE96F: ??? ==41348== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41348== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41348== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41348== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41348== by 0x11EC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41348== by 0x11E60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41348== by 0x10B34D38: PetscInitialize (pinit.c:924) ==41348== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41348== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41348== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41348== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41348== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41348== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41348== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41348== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41348== ==41348== Open file descriptor 158: ==41348== ==41348== ==41348== Open file descriptor 155: ==41348== ==41348== ==41348== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==41348== ==41348== ==41348== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41348== ==41348== ==41348== ==41348== HEAP SUMMARY: ==41348== in use at exit: 618,380 bytes in 8,236 blocks ==41348== total heap usage: 16,190,826 allocs, 16,182,590 frees, 2,830,183,698 bytes allocated ==41348== ==41348== LEAK SUMMARY: ==41348== definitely lost: 0 bytes in 0 blocks ==41348== indirectly lost: 0 bytes in 0 blocks ==41348== possibly lost: 0 bytes in 0 blocks ==41348== still reachable: 56 bytes in 3 blocks ==41348== suppressed: 618,324 bytes in 8,233 blocks ==41348== Reachable blocks (those to which a pointer was found) are not shown. ==41348== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41348== ==41348== For lists of detected and suppressed errors, rerun with: -s ==41348== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)