==41094== Memcheck, a memory error detector ==41094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41094== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==41094== Parent PID: 24446 ==41094== ==41094== ==41094== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41094== Open file descriptor 12: ==41094== at 0x1260107D: pipe (pipe.c:29) ==41094== by 0x1B3BD07D: ??? ==41094== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41094== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41094== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41094== by 0x10B99D38: PetscInitialize (pinit.c:924) ==41094== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41094== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41094== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41094== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41094== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41094== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41094== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41094== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==41094== ==41094== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41094== at 0x12605A1C: __open_nocancel (open64_nocancel.c:39) ==41094== by 0x12589BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41094== by 0x611C822: ??? ==41094== by 0x611C96F: ??? ==41094== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41094== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41094== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41094== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41094== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41094== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41094== by 0x10B99D38: PetscInitialize (pinit.c:924) ==41094== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41094== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41094== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41094== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41094== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41094== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41094== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41094== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==41094== ==41094== Open file descriptor 158: ==41094== ==41094== ==41094== Open file descriptor 155: ==41094== ==41094== ==41094== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==41094== ==41094== ==41094== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41094== ==41094== ==41094== ==41094== HEAP SUMMARY: ==41094== in use at exit: 618,382 bytes in 8,236 blocks ==41094== total heap usage: 3,713,927 allocs, 3,705,691 frees, 1,620,672,526 bytes allocated ==41094== ==41094== LEAK SUMMARY: ==41094== definitely lost: 0 bytes in 0 blocks ==41094== indirectly lost: 0 bytes in 0 blocks ==41094== possibly lost: 0 bytes in 0 blocks ==41094== still reachable: 56 bytes in 3 blocks ==41094== suppressed: 618,326 bytes in 8,233 blocks ==41094== Reachable blocks (those to which a pointer was found) are not shown. ==41094== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41094== ==41094== For lists of detected and suppressed errors, rerun with: -s ==41094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)