==41003== Memcheck, a memory error detector ==41003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41003== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==41003== Parent PID: 24446 ==41003== ==41003== ==41003== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41003== Open file descriptor 12: ==41003== at 0x125BF07D: pipe (pipe.c:29) ==41003== by 0x1B3BD07D: ??? ==41003== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41003== by 0x11EC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x11E60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x10B34D38: PetscInitialize (pinit.c:924) ==41003== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41003== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41003== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41003== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41003== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41003== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41003== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41003== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==41003== ==41003== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41003== at 0x125C3A1C: __open_nocancel (open64_nocancel.c:39) ==41003== by 0x12547BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41003== by 0x11DBE822: ??? ==41003== by 0x11DBE96F: ??? ==41003== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41003== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41003== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41003== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41003== by 0x11EC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x11E60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x10B34D38: PetscInitialize (pinit.c:924) ==41003== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41003== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41003== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41003== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41003== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41003== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41003== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41003== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==41003== ==41003== Open file descriptor 158: ==41003== ==41003== ==41003== Open file descriptor 155: ==41003== ==41003== ==41003== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==41003== ==41003== ==41003== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41003== ==41003== ==41003== ==41003== HEAP SUMMARY: ==41003== in use at exit: 618,535 bytes in 8,241 blocks ==41003== total heap usage: 53,880 allocs, 45,639 frees, 1,339,303,281 bytes allocated ==41003== ==41003== LEAK SUMMARY: ==41003== definitely lost: 0 bytes in 0 blocks ==41003== indirectly lost: 0 bytes in 0 blocks ==41003== possibly lost: 0 bytes in 0 blocks ==41003== still reachable: 136 bytes in 4 blocks ==41003== suppressed: 618,399 bytes in 8,237 blocks ==41003== Reachable blocks (those to which a pointer was found) are not shown. ==41003== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41003== ==41003== For lists of detected and suppressed errors, rerun with: -s ==41003== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)