==40837== Memcheck, a memory error detector ==40837== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40837== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40837== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40837== Parent PID: 24446 ==40837== ==40837== ==40837== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40837== Open file descriptor 12: ==40837== at 0x1110807D: pipe (pipe.c:29) ==40837== by 0x1B3BF07D: ??? ==40837== by 0x165C14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40837== by 0x12E8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40837== by 0x12E28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40837== by 0x11B1FD38: PetscInitialize (pinit.c:924) ==40837== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40837== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40837== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40837== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40837== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40837== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40837== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40837== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40837== ==40837== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40837== at 0x1110CA1C: __open_nocancel (open64_nocancel.c:39) ==40837== by 0x11090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40837== by 0x10A40822: ??? ==40837== by 0x10A4096F: ??? ==40837== by 0x166666DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40837== by 0x16666938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40837== by 0x1661C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40837== by 0x165C12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40837== by 0x12E8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40837== by 0x12E28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40837== by 0x11B1FD38: PetscInitialize (pinit.c:924) ==40837== by 0x10A0C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40837== by 0x10A0C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40837== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40837== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40837== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40837== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40837== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40837== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40837== ==40837== Open file descriptor 158: ==40837== ==40837== ==40837== Open file descriptor 155: ==40837== ==40837== ==40837== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40837== ==40837== ==40837== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40837== ==40837== ==40837== ==40837== HEAP SUMMARY: ==40837== in use at exit: 618,455 bytes in 8,240 blocks ==40837== total heap usage: 56,489 allocs, 48,249 frees, 1,339,521,505 bytes allocated ==40837== ==40837== LEAK SUMMARY: ==40837== definitely lost: 0 bytes in 0 blocks ==40837== indirectly lost: 0 bytes in 0 blocks ==40837== possibly lost: 0 bytes in 0 blocks ==40837== still reachable: 56 bytes in 3 blocks ==40837== suppressed: 618,399 bytes in 8,237 blocks ==40837== Reachable blocks (those to which a pointer was found) are not shown. ==40837== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40837== ==40837== For lists of detected and suppressed errors, rerun with: -s ==40837== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)