==26281== Memcheck, a memory error detector ==26281== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26281== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26281== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26281== Parent PID: 24439 ==26281== ==26281== ==26281== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26281== Open file descriptor 12: ==26281== at 0xEFDA07D: pipe (pipe.c:29) ==26281== by 0x196FC07D: ??? ==26281== by 0x13CA04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26281== by 0xEBE5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26281== by 0xEB7ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26281== by 0xD852D38: PetscInitialize (pinit.c:924) ==26281== by 0xD72A079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26281== by 0xD72A0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26281== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26281== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26281== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26281== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26281== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26281== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26281== ==26281== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26281== at 0xEFDEA1C: __open_nocancel (open64_nocancel.c:39) ==26281== by 0xEF62BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26281== by 0xEADC822: ??? ==26281== by 0xEADC96F: ??? ==26281== by 0x13D456DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26281== by 0x13D45938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26281== by 0x13CFB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26281== by 0x13CA02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26281== by 0xEBE5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26281== by 0xEB7ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26281== by 0xD852D38: PetscInitialize (pinit.c:924) ==26281== by 0xD72A079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26281== by 0xD72A0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26281== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26281== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26281== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26281== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26281== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26281== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26281== ==26281== Open file descriptor 158: ==26281== ==26281== ==26281== Open file descriptor 155: ==26281== ==26281== ==26281== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26281== ==26281== ==26281== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26281== ==26281== ==26281== ==26281== HEAP SUMMARY: ==26281== in use at exit: 618,403 bytes in 8,239 blocks ==26281== total heap usage: 166,086 allocs, 157,847 frees, 1,349,980,732 bytes allocated ==26281== ==26281== LEAK SUMMARY: ==26281== definitely lost: 0 bytes in 0 blocks ==26281== indirectly lost: 0 bytes in 0 blocks ==26281== possibly lost: 0 bytes in 0 blocks ==26281== still reachable: 24 bytes in 2 blocks ==26281== suppressed: 618,379 bytes in 8,237 blocks ==26281== Reachable blocks (those to which a pointer was found) are not shown. ==26281== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26281== ==26281== For lists of detected and suppressed errors, rerun with: -s ==26281== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)