==40057== Memcheck, a memory error detector ==40057== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40057== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40057== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info ==40057== Parent PID: 24153 ==40057== ==40057== ==40057== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40057== Open file descriptor 12: ==40057== at 0x10D4107D: pipe (pipe.c:29) ==40057== by 0x196FC07D: ??? ==40057== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40057== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40057== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40057== by 0xF274D38: PetscInitialize (pinit.c:924) ==40057== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40057== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40057== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40057== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40057== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40057== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40057== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40057== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==40057== ==40057== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40057== at 0x10D45A1C: __open_nocancel (open64_nocancel.c:39) ==40057== by 0x10CC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40057== by 0x104FE822: ??? ==40057== by 0x104FE96F: ??? ==40057== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40057== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40057== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40057== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40057== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40057== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40057== by 0xF274D38: PetscInitialize (pinit.c:924) ==40057== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40057== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40057== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40057== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40057== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40057== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40057== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40057== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==40057== ==40057== Open file descriptor 158: ==40057== ==40057== ==40057== Open file descriptor 155: ==40057== ==40057== ==40057== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt ==40057== ==40057== ==40057== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40057== ==40057== ==40057== ==40057== HEAP SUMMARY: ==40057== in use at exit: 618,439 bytes in 8,240 blocks ==40057== total heap usage: 426,419 allocs, 418,179 frees, 1,393,800,828 bytes allocated ==40057== ==40057== LEAK SUMMARY: ==40057== definitely lost: 0 bytes in 0 blocks ==40057== indirectly lost: 0 bytes in 0 blocks ==40057== possibly lost: 0 bytes in 0 blocks ==40057== still reachable: 56 bytes in 3 blocks ==40057== suppressed: 618,383 bytes in 8,237 blocks ==40057== Reachable blocks (those to which a pointer was found) are not shown. ==40057== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40057== ==40057== For lists of detected and suppressed errors, rerun with: -s ==40057== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)