==40504== Memcheck, a memory error detector ==40504== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40504== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40504== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40504== Parent PID: 24153 ==40504== ==40504== ==40504== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40504== Open file descriptor 12: ==40504== at 0x1099D07D: pipe (pipe.c:29) ==40504== by 0x1B3BE07D: ??? ==40504== by 0x1550F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40504== by 0x102A5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40504== by 0x1023ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40504== by 0xEF35D38: PetscInitialize (pinit.c:924) ==40504== by 0xEE0D079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40504== by 0xEE0D0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40504== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40504== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40504== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40504== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40504== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40504== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40504== ==40504== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40504== at 0x109A1A1C: __open_nocancel (open64_nocancel.c:39) ==40504== by 0x10925BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40504== by 0x611C822: ??? ==40504== by 0x611C96F: ??? ==40504== by 0x155B46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40504== by 0x155B4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40504== by 0x1556A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40504== by 0x1550F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40504== by 0x102A5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40504== by 0x1023ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40504== by 0xEF35D38: PetscInitialize (pinit.c:924) ==40504== by 0xEE0D079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40504== by 0xEE0D0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40504== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40504== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40504== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40504== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40504== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40504== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40504== ==40504== Open file descriptor 158: ==40504== ==40504== ==40504== Open file descriptor 155: ==40504== ==40504== ==40504== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40504== ==40504== ==40504== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40504== ==40504== ==40504== ==40504== HEAP SUMMARY: ==40504== in use at exit: 618,519 bytes in 8,241 blocks ==40504== total heap usage: 754,716 allocs, 746,475 frees, 1,373,121,679 bytes allocated ==40504== ==40504== LEAK SUMMARY: ==40504== definitely lost: 0 bytes in 0 blocks ==40504== indirectly lost: 0 bytes in 0 blocks ==40504== possibly lost: 0 bytes in 0 blocks ==40504== still reachable: 120 bytes in 4 blocks ==40504== suppressed: 618,399 bytes in 8,237 blocks ==40504== Reachable blocks (those to which a pointer was found) are not shown. ==40504== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40504== ==40504== For lists of detected and suppressed errors, rerun with: -s ==40504== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)