==26492== Memcheck, a memory error detector ==26492== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26492== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26492== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==26492== Parent PID: 24189 ==26492== ==26492== ==26492== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26492== Open file descriptor 12: ==26492== at 0xF84807D: pipe (pipe.c:29) ==26492== by 0x196FC07D: ??? ==26492== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26492== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26492== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26492== by 0x10134D38: PetscInitialize (pinit.c:924) ==26492== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26492== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26492== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26492== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26492== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26492== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26492== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26492== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26492== ==26492== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26492== at 0xF84CA1C: __open_nocancel (open64_nocancel.c:39) ==26492== by 0xF7D0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26492== by 0xF180822: ??? ==26492== by 0xF18096F: ??? ==26492== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26492== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26492== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26492== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26492== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26492== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26492== by 0x10134D38: PetscInitialize (pinit.c:924) ==26492== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26492== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26492== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26492== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26492== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26492== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26492== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26492== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26492== ==26492== Open file descriptor 158: ==26492== ==26492== ==26492== Open file descriptor 155: ==26492== ==26492== ==26492== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==26492== ==26492== ==26492== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26492== ==26492== ==26492== ==26492== HEAP SUMMARY: ==26492== in use at exit: 618,439 bytes in 8,240 blocks ==26492== total heap usage: 1,124,509 allocs, 1,116,269 frees, 1,416,267,957 bytes allocated ==26492== ==26492== LEAK SUMMARY: ==26492== definitely lost: 0 bytes in 0 blocks ==26492== indirectly lost: 0 bytes in 0 blocks ==26492== possibly lost: 0 bytes in 0 blocks ==26492== still reachable: 56 bytes in 3 blocks ==26492== suppressed: 618,383 bytes in 8,237 blocks ==26492== Reachable blocks (those to which a pointer was found) are not shown. ==26492== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26492== ==26492== For lists of detected and suppressed errors, rerun with: -s ==26492== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)