==27270== Memcheck, a memory error detector ==27270== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27270== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27270== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27270== Parent PID: 24189 ==27270== ==27270== ==27270== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27270== Open file descriptor 12: ==27270== at 0xFD1007D: pipe (pipe.c:29) ==27270== by 0x196FC07D: ??? ==27270== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27270== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27270== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27270== by 0x1025FD38: PetscInitialize (pinit.c:924) ==27270== by 0xF4E9079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27270== by 0xF4E90C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27270== by 0x22242E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27270== by 0x21BAF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27270== by 0x21F62A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27270== by 0x21F4CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27270== by 0x21FB61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27270== by 0x219ED5: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27270== ==27270== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27270== at 0xFD14A1C: __open_nocancel (open64_nocancel.c:39) ==27270== by 0xFC98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27270== by 0xF51D822: ??? ==27270== by 0xF51D96F: ??? ==27270== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27270== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27270== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27270== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27270== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27270== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27270== by 0x1025FD38: PetscInitialize (pinit.c:924) ==27270== by 0xF4E9079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27270== by 0xF4E90C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27270== by 0x22242E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27270== by 0x21BAF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27270== by 0x21F62A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27270== by 0x21F4CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27270== by 0x21FB61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27270== by 0x219ED5: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27270== ==27270== Open file descriptor 158: ==27270== ==27270== ==27270== Open file descriptor 155: ==27270== ==27270== ==27270== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27270== ==27270== ==27270== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27270== ==27270== ==27270== ==27270== HEAP SUMMARY: ==27270== in use at exit: 618,366 bytes in 8,236 blocks ==27270== total heap usage: 8,062,837 allocs, 8,054,601 frees, 2,693,275,327 bytes allocated ==27270== ==27270== LEAK SUMMARY: ==27270== definitely lost: 0 bytes in 0 blocks ==27270== indirectly lost: 0 bytes in 0 blocks ==27270== possibly lost: 0 bytes in 0 blocks ==27270== still reachable: 56 bytes in 3 blocks ==27270== suppressed: 618,310 bytes in 8,233 blocks ==27270== Reachable blocks (those to which a pointer was found) are not shown. ==27270== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27270== ==27270== For lists of detected and suppressed errors, rerun with: -s ==27270== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)