==40875== Memcheck, a memory error detector ==40875== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40875== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40875== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40875== Parent PID: 24133 ==40875== ==40875== ==40875== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40875== Open file descriptor 12: ==40875== at 0x1123307D: pipe (pipe.c:29) ==40875== by 0x1B3BF07D: ??? ==40875== by 0x165C14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40875== by 0x12E8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40875== by 0x12E28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40875== by 0x11B1FD38: PetscInitialize (pinit.c:924) ==40875== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40875== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40875== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40875== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40875== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40875== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40875== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40875== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40875== ==40875== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40875== at 0x11237A1C: __open_nocancel (open64_nocancel.c:39) ==40875== by 0x111BBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40875== by 0x611C822: ??? ==40875== by 0x611C96F: ??? ==40875== by 0x166666DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40875== by 0x16666938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40875== by 0x1661C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40875== by 0x165C12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40875== by 0x12E8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40875== by 0x12E28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40875== by 0x11B1FD38: PetscInitialize (pinit.c:924) ==40875== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40875== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40875== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40875== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40875== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40875== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40875== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40875== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40875== ==40875== Open file descriptor 158: ==40875== ==40875== ==40875== Open file descriptor 155: ==40875== ==40875== ==40875== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40875== ==40875== ==40875== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40875== ==40875== ==40875== ==40875== HEAP SUMMARY: ==40875== in use at exit: 618,380 bytes in 8,236 blocks ==40875== total heap usage: 6,320,372 allocs, 6,312,136 frees, 2,057,105,677 bytes allocated ==40875== ==40875== LEAK SUMMARY: ==40875== definitely lost: 0 bytes in 0 blocks ==40875== indirectly lost: 0 bytes in 0 blocks ==40875== possibly lost: 0 bytes in 0 blocks ==40875== still reachable: 56 bytes in 3 blocks ==40875== suppressed: 618,324 bytes in 8,233 blocks ==40875== Reachable blocks (those to which a pointer was found) are not shown. ==40875== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40875== ==40875== For lists of detected and suppressed errors, rerun with: -s ==40875== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)