==40346== Memcheck, a memory error detector ==40346== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40346== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40346== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40346== Parent PID: 24133 ==40346== ==40346== ==40346== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40346== Open file descriptor 12: ==40346== at 0x10CFF07D: pipe (pipe.c:29) ==40346== by 0x196FC07D: ??? ==40346== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40346== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40346== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40346== by 0xF274D38: PetscInitialize (pinit.c:924) ==40346== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40346== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40346== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40346== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40346== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40346== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40346== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40346== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40346== ==40346== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40346== at 0x10D03A1C: __open_nocancel (open64_nocancel.c:39) ==40346== by 0x10C87BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40346== by 0x104FE822: ??? ==40346== by 0x104FE96F: ??? ==40346== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40346== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40346== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40346== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40346== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40346== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40346== by 0xF274D38: PetscInitialize (pinit.c:924) ==40346== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40346== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40346== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40346== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40346== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40346== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40346== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40346== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40346== ==40346== Open file descriptor 158: ==40346== ==40346== ==40346== Open file descriptor 155: ==40346== ==40346== ==40346== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt ==40346== ==40346== ==40346== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40346== ==40346== ==40346== ==40346== HEAP SUMMARY: ==40346== in use at exit: 618,364 bytes in 8,236 blocks ==40346== total heap usage: 654,952 allocs, 646,716 frees, 1,513,200,842 bytes allocated ==40346== ==40346== LEAK SUMMARY: ==40346== definitely lost: 0 bytes in 0 blocks ==40346== indirectly lost: 0 bytes in 0 blocks ==40346== possibly lost: 0 bytes in 0 blocks ==40346== still reachable: 56 bytes in 3 blocks ==40346== suppressed: 618,308 bytes in 8,233 blocks ==40346== Reachable blocks (those to which a pointer was found) are not shown. ==40346== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40346== ==40346== For lists of detected and suppressed errors, rerun with: -s ==40346== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)