==26400== Memcheck, a memory error detector ==26400== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26400== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26400== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26400== Parent PID: 24133 ==26400== ==26400== ==26400== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26400== Open file descriptor 12: ==26400== at 0x10D4107D: pipe (pipe.c:29) ==26400== by 0x196FC07D: ??? ==26400== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26400== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26400== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26400== by 0xF274D38: PetscInitialize (pinit.c:924) ==26400== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26400== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26400== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26400== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26400== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26400== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26400== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26400== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) ==26400== ==26400== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26400== at 0x10D45A1C: __open_nocancel (open64_nocancel.c:39) ==26400== by 0x10CC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26400== by 0x104FE822: ??? ==26400== by 0x104FE96F: ??? ==26400== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26400== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26400== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26400== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26400== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26400== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26400== by 0xF274D38: PetscInitialize (pinit.c:924) ==26400== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26400== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26400== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26400== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26400== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26400== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26400== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26400== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) ==26400== ==26400== Open file descriptor 158: ==26400== ==26400== ==26400== Open file descriptor 155: ==26400== ==26400== ==26400== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt ==26400== ==26400== ==26400== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26400== ==26400== ==26400== ==26400== HEAP SUMMARY: ==26400== in use at exit: 618,435 bytes in 8,240 blocks ==26400== total heap usage: 171,065 allocs, 162,825 frees, 1,350,791,437 bytes allocated ==26400== ==26400== LEAK SUMMARY: ==26400== definitely lost: 0 bytes in 0 blocks ==26400== indirectly lost: 0 bytes in 0 blocks ==26400== possibly lost: 0 bytes in 0 blocks ==26400== still reachable: 56 bytes in 3 blocks ==26400== suppressed: 618,379 bytes in 8,237 blocks ==26400== Reachable blocks (those to which a pointer was found) are not shown. ==26400== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26400== ==26400== For lists of detected and suppressed errors, rerun with: -s ==26400== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)