==27525== Memcheck, a memory error detector ==27525== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27525== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27525== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27525== Parent PID: 24187 ==27525== ==27525== ==27525== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27525== Open file descriptor 12: ==27525== at 0x10E2807D: pipe (pipe.c:29) ==27525== by 0x196FC07D: ??? ==27525== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27525== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27525== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27525== by 0xF274D38: PetscInitialize (pinit.c:924) ==27525== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27525== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27525== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27525== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27525== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27525== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27525== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27525== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27525== ==27525== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27525== at 0x10E2CA1C: __open_nocancel (open64_nocancel.c:39) ==27525== by 0x10DB0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27525== by 0x104FE822: ??? ==27525== by 0x104FE96F: ??? ==27525== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27525== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27525== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27525== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27525== by 0x10607418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27525== by 0x105A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27525== by 0xF274D38: PetscInitialize (pinit.c:924) ==27525== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27525== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27525== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27525== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27525== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27525== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27525== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27525== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27525== ==27525== Open file descriptor 158: ==27525== ==27525== ==27525== Open file descriptor 155: ==27525== ==27525== ==27525== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27525== ==27525== ==27525== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27525== ==27525== ==27525== ==27525== HEAP SUMMARY: ==27525== in use at exit: 618,364 bytes in 8,236 blocks ==27525== total heap usage: 9,703,022 allocs, 9,694,786 frees, 2,583,867,051 bytes allocated ==27525== ==27525== LEAK SUMMARY: ==27525== definitely lost: 0 bytes in 0 blocks ==27525== indirectly lost: 0 bytes in 0 blocks ==27525== possibly lost: 0 bytes in 0 blocks ==27525== still reachable: 56 bytes in 3 blocks ==27525== suppressed: 618,308 bytes in 8,233 blocks ==27525== Reachable blocks (those to which a pointer was found) are not shown. ==27525== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27525== ==27525== For lists of detected and suppressed errors, rerun with: -s ==27525== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)