==26721== Memcheck, a memory error detector ==26721== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26721== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26721== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==26721== Parent PID: 24188 ==26721== ==26721== ==26721== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26721== Open file descriptor 12: ==26721== at 0xF97307D: pipe (pipe.c:29) ==26721== by 0x196FC07D: ??? ==26721== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26721== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26721== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26721== by 0x1025FD38: PetscInitialize (pinit.c:924) ==26721== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26721== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26721== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26721== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26721== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26721== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26721== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26721== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26721== ==26721== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26721== at 0xF977A1C: __open_nocancel (open64_nocancel.c:39) ==26721== by 0xF8FBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26721== by 0xF180822: ??? ==26721== by 0xF18096F: ??? ==26721== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26721== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26721== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26721== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26721== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26721== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26721== by 0x1025FD38: PetscInitialize (pinit.c:924) ==26721== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26721== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26721== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26721== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26721== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26721== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26721== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26721== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26721== ==26721== Open file descriptor 152: ==26721== ==26721== ==26721== Open file descriptor 149: ==26721== ==26721== ==26721== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==26721== ==26721== ==26721== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26721== ==26721== ==26721== ==26721== HEAP SUMMARY: ==26721== in use at exit: 618,366 bytes in 8,236 blocks ==26721== total heap usage: 12,337,462 allocs, 12,329,226 frees, 3,799,162,351 bytes allocated ==26721== ==26721== LEAK SUMMARY: ==26721== definitely lost: 0 bytes in 0 blocks ==26721== indirectly lost: 0 bytes in 0 blocks ==26721== possibly lost: 0 bytes in 0 blocks ==26721== still reachable: 56 bytes in 3 blocks ==26721== suppressed: 618,310 bytes in 8,233 blocks ==26721== Reachable blocks (those to which a pointer was found) are not shown. ==26721== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26721== ==26721== For lists of detected and suppressed errors, rerun with: -s ==26721== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)