==26485== Memcheck, a memory error detector ==26485== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26485== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26485== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==26485== Parent PID: 24228 ==26485== ==26485== ==26485== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26485== Open file descriptor 12: ==26485== at 0xF84807D: pipe (pipe.c:29) ==26485== by 0x196FC07D: ??? ==26485== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26485== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26485== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26485== by 0x10134D38: PetscInitialize (pinit.c:924) ==26485== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26485== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26485== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26485== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26485== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26485== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26485== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26485== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26485== ==26485== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26485== at 0xF84CA1C: __open_nocancel (open64_nocancel.c:39) ==26485== by 0xF7D0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26485== by 0xF180822: ??? ==26485== by 0xF18096F: ??? ==26485== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26485== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26485== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26485== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26485== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26485== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26485== by 0x10134D38: PetscInitialize (pinit.c:924) ==26485== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26485== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26485== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26485== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26485== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26485== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26485== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26485== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26485== ==26485== Open file descriptor 152: ==26485== ==26485== ==26485== Open file descriptor 149: ==26485== ==26485== ==26485== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==26485== ==26485== ==26485== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26485== ==26485== ==26485== ==26485== HEAP SUMMARY: ==26485== in use at exit: 618,431 bytes in 8,240 blocks ==26485== total heap usage: 1,124,510 allocs, 1,116,270 frees, 1,416,268,626 bytes allocated ==26485== ==26485== LEAK SUMMARY: ==26485== definitely lost: 0 bytes in 0 blocks ==26485== indirectly lost: 0 bytes in 0 blocks ==26485== possibly lost: 0 bytes in 0 blocks ==26485== still reachable: 56 bytes in 3 blocks ==26485== suppressed: 618,375 bytes in 8,237 blocks ==26485== Reachable blocks (those to which a pointer was found) are not shown. ==26485== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26485== ==26485== For lists of detected and suppressed errors, rerun with: -s ==26485== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)