==40451== Memcheck, a memory error detector ==40451== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40451== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40451== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40451== Parent PID: 24228 ==40451== ==40451== ==40451== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40451== Open file descriptor 12: ==40451== at 0xFBE507D: pipe (pipe.c:29) ==40451== by 0x196FC07D: ??? ==40451== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40451== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40451== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40451== by 0x10134D38: PetscInitialize (pinit.c:924) ==40451== by 0xF4E9079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40451== by 0xF4E90C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40451== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40451== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40451== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40451== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40451== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40451== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40451== ==40451== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40451== at 0xFBE9A1C: __open_nocancel (open64_nocancel.c:39) ==40451== by 0xFB6DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40451== by 0xF51D822: ??? ==40451== by 0xF51D96F: ??? ==40451== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40451== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40451== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40451== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40451== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40451== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40451== by 0x10134D38: PetscInitialize (pinit.c:924) ==40451== by 0xF4E9079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40451== by 0xF4E90C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40451== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40451== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40451== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40451== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40451== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40451== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40451== ==40451== Open file descriptor 152: ==40451== ==40451== ==40451== Open file descriptor 149: ==40451== ==40451== ==40451== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40451== ==40451== ==40451== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40451== ==40451== ==40451== ==40451== HEAP SUMMARY: ==40451== in use at exit: 618,362 bytes in 8,236 blocks ==40451== total heap usage: 2,093,075 allocs, 2,084,839 frees, 1,708,824,768 bytes allocated ==40451== ==40451== LEAK SUMMARY: ==40451== definitely lost: 0 bytes in 0 blocks ==40451== indirectly lost: 0 bytes in 0 blocks ==40451== possibly lost: 0 bytes in 0 blocks ==40451== still reachable: 56 bytes in 3 blocks ==40451== suppressed: 618,306 bytes in 8,233 blocks ==40451== Reachable blocks (those to which a pointer was found) are not shown. ==40451== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40451== ==40451== For lists of detected and suppressed errors, rerun with: -s ==40451== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)