==40643== Memcheck, a memory error detector ==40643== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40643== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40643== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==40643== Parent PID: 24276 ==40643== ==40643== ==40643== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40643== Open file descriptor 12: ==40643== at 0xF3FE07D: pipe (pipe.c:29) ==40643== by 0x1B3DA07D: ??? ==40643== by 0x165DC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40643== by 0x12EAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40643== by 0x12E43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40643== by 0x11B3AD38: PetscInitialize (pinit.c:924) ==40643== by 0xF06A079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40643== by 0xF06A0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40643== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40643== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40643== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40643== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40643== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40643== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40643== ==40643== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40643== at 0xF402A1C: __open_nocancel (open64_nocancel.c:39) ==40643== by 0xF386BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40643== by 0x611C822: ??? ==40643== by 0x611C96F: ??? ==40643== by 0x166816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40643== by 0x16681938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40643== by 0x16637922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40643== by 0x165DC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40643== by 0x12EAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40643== by 0x12E43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40643== by 0x11B3AD38: PetscInitialize (pinit.c:924) ==40643== by 0xF06A079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40643== by 0xF06A0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40643== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40643== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40643== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40643== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40643== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40643== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40643== ==40643== Open file descriptor 152: ==40643== ==40643== ==40643== Open file descriptor 149: ==40643== ==40643== ==40643== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==40643== ==40643== ==40643== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40643== ==40643== ==40643== ==40643== HEAP SUMMARY: ==40643== in use at exit: 618,455 bytes in 8,240 blocks ==40643== total heap usage: 66,806 allocs, 58,566 frees, 1,340,713,166 bytes allocated ==40643== ==40643== LEAK SUMMARY: ==40643== definitely lost: 0 bytes in 0 blocks ==40643== indirectly lost: 0 bytes in 0 blocks ==40643== possibly lost: 0 bytes in 0 blocks ==40643== still reachable: 56 bytes in 3 blocks ==40643== suppressed: 618,399 bytes in 8,237 blocks ==40643== Reachable blocks (those to which a pointer was found) are not shown. ==40643== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40643== ==40643== For lists of detected and suppressed errors, rerun with: -s ==40643== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)