==40400== Memcheck, a memory error detector ==40400== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40400== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40400== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40400== Parent PID: 24276 ==40400== ==40400== ==40400== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40400== Open file descriptor 12: ==40400== at 0x10D1A07D: pipe (pipe.c:29) ==40400== by 0x1971807D: ??? ==40400== by 0x14C7D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40400== by 0x10622418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40400== by 0x105BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40400== by 0xF28FD38: PetscInitialize (pinit.c:924) ==40400== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40400== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40400== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40400== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40400== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40400== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40400== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40400== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40400== ==40400== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40400== at 0x10D1EA1C: __open_nocancel (open64_nocancel.c:39) ==40400== by 0x10CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40400== by 0x10519822: ??? ==40400== by 0x1051996F: ??? ==40400== by 0x14D246DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40400== by 0x14D24938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40400== by 0x14CDA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40400== by 0x14C7D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40400== by 0x10622418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40400== by 0x105BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40400== by 0xF28FD38: PetscInitialize (pinit.c:924) ==40400== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40400== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40400== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40400== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40400== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40400== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40400== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40400== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40400== ==40400== Open file descriptor 152: ==40400== ==40400== ==40400== Open file descriptor 149: ==40400== ==40400== ==40400== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40400== ==40400== ==40400== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40400== ==40400== ==40400== ==40400== HEAP SUMMARY: ==40400== in use at exit: 618,366 bytes in 8,236 blocks ==40400== total heap usage: 3,501,454 allocs, 3,493,218 frees, 2,270,512,109 bytes allocated ==40400== ==40400== LEAK SUMMARY: ==40400== definitely lost: 0 bytes in 0 blocks ==40400== indirectly lost: 0 bytes in 0 blocks ==40400== possibly lost: 0 bytes in 0 blocks ==40400== still reachable: 56 bytes in 3 blocks ==40400== suppressed: 618,310 bytes in 8,233 blocks ==40400== Reachable blocks (those to which a pointer was found) are not shown. ==40400== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40400== ==40400== For lists of detected and suppressed errors, rerun with: -s ==40400== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)