==40437== Memcheck, a memory error detector ==40437== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40437== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40437== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40437== Parent PID: 24276 ==40437== ==40437== ==40437== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40437== Open file descriptor 12: ==40437== at 0xF94A07D: pipe (pipe.c:29) ==40437== by 0x1971807D: ??? ==40437== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40437== by 0x115A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40437== by 0x11541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40437== by 0x10236D38: PetscInitialize (pinit.c:924) ==40437== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40437== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40437== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40437== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40437== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40437== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40437== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40437== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40437== ==40437== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40437== at 0xF94EA1C: __open_nocancel (open64_nocancel.c:39) ==40437== by 0xF8D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40437== by 0xF19B822: ??? ==40437== by 0xF19B96F: ??? ==40437== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40437== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40437== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40437== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40437== by 0x115A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40437== by 0x11541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40437== by 0x10236D38: PetscInitialize (pinit.c:924) ==40437== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40437== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40437== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40437== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40437== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40437== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40437== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40437== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40437== ==40437== Open file descriptor 152: ==40437== ==40437== ==40437== Open file descriptor 149: ==40437== ==40437== ==40437== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40437== ==40437== ==40437== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40437== ==40437== ==40437== ==40437== HEAP SUMMARY: ==40437== in use at exit: 618,439 bytes in 8,240 blocks ==40437== total heap usage: 725,429 allocs, 717,189 frees, 1,726,754,679 bytes allocated ==40437== ==40437== LEAK SUMMARY: ==40437== definitely lost: 0 bytes in 0 blocks ==40437== indirectly lost: 0 bytes in 0 blocks ==40437== possibly lost: 0 bytes in 0 blocks ==40437== still reachable: 56 bytes in 3 blocks ==40437== suppressed: 618,383 bytes in 8,237 blocks ==40437== Reachable blocks (those to which a pointer was found) are not shown. ==40437== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40437== ==40437== For lists of detected and suppressed errors, rerun with: -s ==40437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)