==39932== Memcheck, a memory error detector ==39932== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39932== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39932== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39932== Parent PID: 24252 ==39932== ==39932== ==39932== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39932== Open file descriptor 12: ==39932== at 0x10D5C07D: pipe (pipe.c:29) ==39932== by 0x1971807D: ??? ==39932== by 0x14C7D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39932== by 0x10622418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0x105BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0xF28FD38: PetscInitialize (pinit.c:924) ==39932== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39932== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39932== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39932== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39932== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39932== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39932== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39932== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39932== ==39932== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39932== at 0x10D60A1C: __open_nocancel (open64_nocancel.c:39) ==39932== by 0x10CE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39932== by 0x10519822: ??? ==39932== by 0x1051996F: ??? ==39932== by 0x14D246DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39932== by 0x14D24938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39932== by 0x14CDA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39932== by 0x14C7D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39932== by 0x10622418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0x105BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39932== by 0xF28FD38: PetscInitialize (pinit.c:924) ==39932== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39932== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39932== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39932== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39932== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39932== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39932== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39932== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39932== ==39932== Open file descriptor 152: ==39932== ==39932== ==39932== Open file descriptor 149: ==39932== ==39932== ==39932== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39932== ==39932== ==39932== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39932== ==39932== ==39932== ==39932== HEAP SUMMARY: ==39932== in use at exit: 618,439 bytes in 8,240 blocks ==39932== total heap usage: 579,721 allocs, 571,481 frees, 1,652,037,626 bytes allocated ==39932== ==39932== LEAK SUMMARY: ==39932== definitely lost: 0 bytes in 0 blocks ==39932== indirectly lost: 0 bytes in 0 blocks ==39932== possibly lost: 0 bytes in 0 blocks ==39932== still reachable: 56 bytes in 3 blocks ==39932== suppressed: 618,383 bytes in 8,237 blocks ==39932== Reachable blocks (those to which a pointer was found) are not shown. ==39932== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39932== ==39932== For lists of detected and suppressed errors, rerun with: -s ==39932== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)