==26337== Memcheck, a memory error detector ==26337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26337== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==26337== Parent PID: 24191 ==26337== ==26337== ==26337== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26337== Open file descriptor 12: ==26337== at 0xF86307D: pipe (pipe.c:29) ==26337== by 0x1971807D: ??? ==26337== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26337== by 0x114BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26337== by 0x11458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26337== by 0x1014FD38: PetscInitialize (pinit.c:924) ==26337== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26337== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26337== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26337== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26337== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26337== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26337== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26337== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26337== ==26337== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26337== at 0xF867A1C: __open_nocancel (open64_nocancel.c:39) ==26337== by 0xF7EBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26337== by 0xF1A1822: ??? ==26337== by 0xF1A196F: ??? ==26337== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26337== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26337== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26337== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26337== by 0x114BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26337== by 0x11458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26337== by 0x1014FD38: PetscInitialize (pinit.c:924) ==26337== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26337== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26337== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26337== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26337== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26337== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26337== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26337== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26337== ==26337== Open file descriptor 152: ==26337== ==26337== ==26337== Open file descriptor 149: ==26337== ==26337== ==26337== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==26337== ==26337== ==26337== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26337== ==26337== ==26337== ==26337== HEAP SUMMARY: ==26337== in use at exit: 618,435 bytes in 8,240 blocks ==26337== total heap usage: 1,124,508 allocs, 1,116,268 frees, 1,416,267,925 bytes allocated ==26337== ==26337== LEAK SUMMARY: ==26337== definitely lost: 0 bytes in 0 blocks ==26337== indirectly lost: 0 bytes in 0 blocks ==26337== possibly lost: 0 bytes in 0 blocks ==26337== still reachable: 56 bytes in 3 blocks ==26337== suppressed: 618,379 bytes in 8,237 blocks ==26337== Reachable blocks (those to which a pointer was found) are not shown. ==26337== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26337== ==26337== For lists of detected and suppressed errors, rerun with: -s ==26337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)