==26249== Memcheck, a memory error detector ==26249== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26249== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26249== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==26249== Parent PID: 24191 ==26249== ==26249== ==26249== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26249== Open file descriptor 12: ==26249== at 0xF98E07D: pipe (pipe.c:29) ==26249== by 0x1971807D: ??? ==26249== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26249== by 0x115EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26249== by 0x11583D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26249== by 0x1027AD38: PetscInitialize (pinit.c:924) ==26249== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26249== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26249== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26249== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26249== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26249== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26249== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26249== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26249== ==26249== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26249== at 0xF992A1C: __open_nocancel (open64_nocancel.c:39) ==26249== by 0xF916BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26249== by 0xF1A1822: ??? ==26249== by 0xF1A196F: ??? ==26249== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26249== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26249== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26249== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26249== by 0x115EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26249== by 0x11583D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26249== by 0x1027AD38: PetscInitialize (pinit.c:924) ==26249== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26249== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26249== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26249== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26249== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26249== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26249== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26249== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26249== ==26249== Open file descriptor 152: ==26249== ==26249== ==26249== Open file descriptor 149: ==26249== ==26249== ==26249== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==26249== ==26249== ==26249== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26249== ==26249== ==26249== ==26249== HEAP SUMMARY: ==26249== in use at exit: 618,435 bytes in 8,240 blocks ==26249== total heap usage: 111,886 allocs, 103,646 frees, 1,346,973,937 bytes allocated ==26249== ==26249== LEAK SUMMARY: ==26249== definitely lost: 0 bytes in 0 blocks ==26249== indirectly lost: 0 bytes in 0 blocks ==26249== possibly lost: 0 bytes in 0 blocks ==26249== still reachable: 56 bytes in 3 blocks ==26249== suppressed: 618,379 bytes in 8,237 blocks ==26249== Reachable blocks (those to which a pointer was found) are not shown. ==26249== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26249== ==26249== For lists of detected and suppressed errors, rerun with: -s ==26249== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)