==27028== Memcheck, a memory error detector ==27028== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27028== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27028== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==27028== Parent PID: 24191 ==27028== ==27028== ==27028== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27028== Open file descriptor 12: ==27028== at 0xF94A07D: pipe (pipe.c:29) ==27028== by 0x1971807D: ??? ==27028== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27028== by 0x115A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x11541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x10236D38: PetscInitialize (pinit.c:924) ==27028== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27028== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27028== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27028== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27028== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27028== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27028== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27028== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27028== ==27028== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27028== at 0xF94EA1C: __open_nocancel (open64_nocancel.c:39) ==27028== by 0xF8D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27028== by 0xF1A1822: ??? ==27028== by 0xF1A196F: ??? ==27028== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27028== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27028== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27028== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27028== by 0x115A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x11541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27028== by 0x10236D38: PetscInitialize (pinit.c:924) ==27028== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27028== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27028== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27028== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27028== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27028== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27028== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27028== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27028== ==27028== Open file descriptor 152: ==27028== ==27028== ==27028== Open file descriptor 149: ==27028== ==27028== ==27028== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==27028== ==27028== ==27028== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27028== ==27028== ==27028== ==27028== HEAP SUMMARY: ==27028== in use at exit: 618,364 bytes in 8,236 blocks ==27028== total heap usage: 7,126,962 allocs, 7,118,726 frees, 9,040,294,472 bytes allocated ==27028== ==27028== LEAK SUMMARY: ==27028== definitely lost: 0 bytes in 0 blocks ==27028== indirectly lost: 0 bytes in 0 blocks ==27028== possibly lost: 0 bytes in 0 blocks ==27028== still reachable: 56 bytes in 3 blocks ==27028== suppressed: 618,308 bytes in 8,233 blocks ==27028== Reachable blocks (those to which a pointer was found) are not shown. ==27028== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27028== ==27028== For lists of detected and suppressed errors, rerun with: -s ==27028== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)