==36545== Memcheck, a memory error detector ==36545== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==36545== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==36545== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==36545== Parent PID: 24191 ==36545== ==36545== ==36545== FILE DESCRIPTORS: 9 open (3 std) at exit. ==36545== Open file descriptor 12: ==36545== at 0xF98E07D: pipe (pipe.c:29) ==36545== by 0x1971807D: ??? ==36545== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==36545== by 0x115EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==36545== by 0x11583D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==36545== by 0x1027AD38: PetscInitialize (pinit.c:924) ==36545== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==36545== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==36545== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==36545== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==36545== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==36545== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==36545== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==36545== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==36545== ==36545== Open file descriptor 8: /dev/shm/open_mpi.0000 ==36545== at 0xF992A1C: __open_nocancel (open64_nocancel.c:39) ==36545== by 0xF916BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==36545== by 0xF1A1822: ??? ==36545== by 0xF1A196F: ??? ==36545== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==36545== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==36545== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==36545== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==36545== by 0x115EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==36545== by 0x11583D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==36545== by 0x1027AD38: PetscInitialize (pinit.c:924) ==36545== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==36545== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==36545== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==36545== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==36545== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==36545== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==36545== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==36545== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==36545== ==36545== Open file descriptor 152: ==36545== ==36545== ==36545== Open file descriptor 149: ==36545== ==36545== ==36545== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==36545== ==36545== ==36545== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==36545== ==36545== ==36545== ==36545== HEAP SUMMARY: ==36545== in use at exit: 618,380 bytes in 8,237 blocks ==36545== total heap usage: 11,682,534 allocs, 11,674,297 frees, 2,208,529,387 bytes allocated ==36545== ==36545== LEAK SUMMARY: ==36545== definitely lost: 0 bytes in 0 blocks ==36545== indirectly lost: 0 bytes in 0 blocks ==36545== possibly lost: 0 bytes in 0 blocks ==36545== still reachable: 72 bytes in 4 blocks ==36545== suppressed: 618,308 bytes in 8,233 blocks ==36545== Reachable blocks (those to which a pointer was found) are not shown. ==36545== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==36545== ==36545== For lists of detected and suppressed errors, rerun with: -s ==36545== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)