==39818== Memcheck, a memory error detector ==39818== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39818== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39818== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39818== Parent PID: 24028 ==39818== ==39818== ==39818== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39818== Open file descriptor 12: ==39818== at 0xF86307D: pipe (pipe.c:29) ==39818== by 0x1971807D: ??? ==39818== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39818== by 0x114BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39818== by 0x11458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39818== by 0x1014FD38: PetscInitialize (pinit.c:924) ==39818== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39818== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39818== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39818== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39818== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39818== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39818== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39818== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39818== ==39818== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39818== at 0xF867A1C: __open_nocancel (open64_nocancel.c:39) ==39818== by 0xF7EBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39818== by 0xF19B822: ??? ==39818== by 0xF19B96F: ??? ==39818== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39818== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39818== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39818== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39818== by 0x114BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39818== by 0x11458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39818== by 0x1014FD38: PetscInitialize (pinit.c:924) ==39818== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39818== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39818== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39818== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39818== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39818== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39818== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39818== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39818== ==39818== Open file descriptor 145: ==39818== ==39818== ==39818== Open file descriptor 142: ==39818== ==39818== ==39818== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==39818== ==39818== ==39818== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39818== ==39818== ==39818== ==39818== HEAP SUMMARY: ==39818== in use at exit: 618,370 bytes in 8,236 blocks ==39818== total heap usage: 5,223,393 allocs, 5,215,157 frees, 1,780,281,447 bytes allocated ==39818== ==39818== LEAK SUMMARY: ==39818== definitely lost: 0 bytes in 0 blocks ==39818== indirectly lost: 0 bytes in 0 blocks ==39818== possibly lost: 0 bytes in 0 blocks ==39818== still reachable: 56 bytes in 3 blocks ==39818== suppressed: 618,314 bytes in 8,233 blocks ==39818== Reachable blocks (those to which a pointer was found) are not shown. ==39818== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39818== ==39818== For lists of detected and suppressed errors, rerun with: -s ==39818== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)